PEER REVIEW PUBLICATIONS
See full list in Google Scholar Citation index https://scholar.google.com/citations?user=Pu8Dj-wAAAAJ
Carlos Guerrero-Beltrán, Inmaculada Garcia-Heredia, Rafael Ceña-Diez, Ignacio Rodriguez-Izquierdo, Mª Jesús Serramía, Francisco Martinez-Hernandez, Mónica Lluesma-Gomez, Manuel Martinez-Garcia*, and María Ángeles Muñoz-Fernández*. G2-S16 Dendrimer Inhibits HSV-2 infection and protects mice vaginal microbiome. 2020. Pharmaceutics (in press). Underlined authors: share authorship. (*) corresponding authors
Manuel Martinez-Garcia, Francisco Martinez-Hernandez, Joaquín Martínez Martínez. Chapter Single-Virus Genomics: Studying Uncultured Viruses, One at a Time. In "Encyclopedia of Virology". 2020
Lucia Maestre‐Carballa, Monica Lluesma Gomez, Andrea Angla Navarro, Inmaculada Garcia‐Heredia, Francisco Martinez‐Hernandez, Manuel Martinez‐Garcia. 2019. Insights into the antibiotic resistance dissemination in a wastewater effluent microbiome: bacteria viruses and vesicles matter. Environmental Microbiology. 21 (12), 4582-4596
Francisco Martinez‐Hernandez, Elaine Luo, Kento Tominaga, Hiroyuki Ogata, Takashi Yoshida, Edward F DeLong, Manuel Martinez‐Garcia. Diel cycling of the cosmopolitan abundant Pelagibacter virus 37‐F6: one of the most abundant viruses on earth. (2019). Environmental Microbiology Reports 12 (2), 214-219. Underlined authors: share authorship
Garcia-Heredia I, Bhattacharjee A, Fornas O, Lluesma Gomez M, Martínez Martínez J, Martinez-Garcia M (submitted to Environmental Microbiology). Benchmarking of Single-Virus Genomics: a new tool for uncovering the virosphere
Africa McMullen, Francisco Martinez-Hernandez and Manuel Martinez-Garcia. Absolute quantification of microorganisms by chip-based digital PCR. 2019. Environmental Microbiology Reports. 11 (6), 855-860.
M Mira Miralles, L Maestre-Carballa, M Lluesma-Gomez and Manuel Martinez-Garcia (2019). High-Throughput 16S rRNA Sequencing to Assess Potentially Active Bacteria and Foodborne Pathogens: A Case Example in Ready-to-Eat Food. Foods 8 (10), 480
Maestre-Carballa L, Lluesma Gomez M, Angla Navarro A, Garcia-Heredia I, Martinez-Hernandez F, and Martinez-Garcia M. (2019) Insights into prokaryotic and viral resistomes and potential role of vesicles in antibiotic resistance in wastewater effluent microbiome. Environmental Microbiology. https://doi.org/10.1111/1462-2920.14758
Martinez-Hernandez F, Garcia-Heredia I, Lluesma Gomez M, Maestre-Carballa L, Martínez-Martínez J, and Martinez-Garcia (2019). Using droplet digital PCR to estimate absolute abundances of widespread Pelagibacter viruses. Frontiers in Virology, 10: 1226.
Ana‐Belen Martin‐Cuadrado, Ece Senel, Manuel Martínez‐García, Ana Cifuentes, Fernando Santos, Cristina Almansa, Mercedes Moreno‐Paz, Yolanda Blanco, Miriam García‐Villadangos, M Ángeles García del Cura, M Esther Sanz‐Montero, J Pablo Rodríguez‐Aranda, Ramon Rosselló‐Móra, Josefa Antón, Víctor Parro. Prokaryotic and viral community of the sulfate‐rich crust from Peñahueca ephemeral lake, an astrobiology analogue. (2019). Environmental Microbiology. doi: 10.1111/1462-2920.14680
María Dolores Ramos-Barbero, Ana-B. Martin-Cuadrado, Tomeu Viver, Fernando Santos, Manuel Martinez-Garcia, and Josefa Antón. (2018). Recovering microbial genomes from metagenomes in hypersaline environments: The Good, the Bad and the Ugly. Systematic and Applied Microbiology (2019).
Simon Roux et al. Minimum Information about an Uncultivated Virus Genome (MIUViG). (2018). Nature Biotechnology (2019) doi:10.1038/nbt.4306
Martinez-Hernandez F, Fornas O, Lluesma Gomez M, Garcia-Heredia I, Maestre-Carballa L, López-Pérez M, Haro-Moreno JM, Rodriguez-Valera F, and Martinez-Garcia M. (2018). Single-cell genomics uncover Pelagibacter as the putative host of the extremely abundant uncultured 37-F6 viral population in the ocean. ISME Journal. doi: 10.1038/s41396-018-0278-7
Cruz Peña MJ, Martinez-Hernandez F, Garcia-Heredia I, Lluesma Gomez M, Fornas O and Martinez-Garcia M. (2018). Deciphering the Human Virome with Single-Virus Genomics and Metagenomics. Viruses. 10 (3), 113; doi: 10.3390/v10030113.
Martinez-Hernandez F, Fornas O, Lluesma M, Bolduc B, Cruz MJ, Martínez Martínez J, Antón J, Gasol J, Rosselli R, Rodríguez-Valera R, Sullivan MB, Acinas S and Manuel Martinez-Garcia. Single-virus genomics reveals hidden cosmopolitan and abundant viruses. Nature Communications. (2017) doi:10.1038/ncomms15892
Bertilsson S, Eiler A, Mondav R, Fernandez-Vidal L, Sinclair L, Scofield D, Schwientek P, Martinez-Garcia M, Torrents D, McMahon K, Anderson S, Stepanauskas R, and Woke T. (2016) Tuning fresh: radiation through rewiring of central metabolism in streamlined bacteria. ISME Journal
Gomariz M, Martínez-García M, Santos F, Rodriguez F, Capella-Gutiérrez S, Gabaldón T, Rosselló-Móra R, Meseguer I and Antón J. (2015) From community approaches to single-cell genomics: the discovery of ubiquitous hyperhalophilic Bacteroidetes generalists. ISME Journal. 9: 16-31.
Martínez-García M., Santos F., Moreno-Paz M., Parro V., & Antón J (2014). Unveiling viral-host interactions within the ‘microbial dark matter’. Nature Communications. doi:10.1038/ncomms5542. Recommended in Faculty of 1000
Manuel Martinez-Garcia, Brandon K. Swan, David Brazel, Nicole J. Poulton, Monica Lluesma Gomez, Dashiell Masland, Carol Arnosti, Michael E. Sieracki and Ramunas Stepanauskas. "Capturing Single Cell Genomes of Active Polysaccharide Degraders: An Unexpected Contribution of Verrucomicrobia" (2012). PLoS ONE 7(4): e35314. doi:10.1371/journal.pone.0035314.
Manuel Martinez-Garcia, David Brazel, Nicole J. Poulton, Brandon K. Swan, Monica Lluesma Gomez, Dashiell Masland, Michael E. Sieracki and Ramunas Stepanauskas. (2011) Unveiling in situ interactions between marine protists and bacteria through single cell sequencing. ISME Journal. Mar;6(3):703-707 7. doi: 10.1038/ismej.2011.126. Recommended in Faculty of 1000
Manuel Martinez-Garcia, Brandon K. Swan, Nicole J. Poulton, Monica Lluesma Gomez, Dashiell Masland, Michael E. Sieracki and Ramunas Stepanauskas. (2012) High throughput single cell sequencing identifies photoheterotrophs and chemoautotrophs in freshwater bacterioplankton. ISME Journal. Jan;6(1):113-23. doi: 10.1038/ismej.2011.84.
Brandon K. Swan, Manuel Martinez-Garcia, Christina M. Preston, Nicole Poulton, E. Dashiell P. Masland, Monica Lluesma-Gomez, Edward F. DeLong, Michael E. Sieracki and Ramunas Stepanauskas. (2011). Potential for chemolithoautotrophy among ubiquitous bacteria lineages in the dark ocean. Science. 333: 1296-1300.
Swan, B., Tupper, B., Sczyrba, A., Lauro, F., Martinez-Garcia, M et al. and Stepanauskas, R. (doi: 10.1073/pnas.1304246110 ). Prevalent genome streamlining and latitudinal divergence of surface ocean bacterioplankton. PNAS
Santos F., Martinez Garcia M., Parro V., and Anton, J. (2014, in press). Microarray tools to unveil viral-microbe interactions in nature. Frontiers in Ecology and Evolution.
Ghylin T, Moya F, Oyserman, B, Garcia, S, Mutschler J, Schwientek P, Forest, K, Chan L-K, Martinez-Garcia M, Sczyrba A, Stepanauskas R, Grossart H, Woyke T, Warnecke F, Malmstrom R, Bertilsson S, McMahon K. Comparative single-cell genomics reveals potential ecological niches for freshwater ultramicrobacteria of the acI Actinobacteria lineage. ISME Journal (In press).
María Gomariz, Manuel Martínez-García, Fernando Santos, Francisco Rodriguez, Salvador Capella-Gutiérrez, Toni Gabaldón, Ramon Rosselló-Móra, Inmaculada Meseguer, and Josefa Antón. From community approaches to single cell genomics: the discovery of ubiquitous hyperhalophilic Bacteroidetes generalists. ISME Journal (In press).
Swan, B, Chaffin, M, Martinez-Garcia, M, Morrison, H, Field E, Poulton N, Masland D, Harris C, Sczyrba A, Chain P, Koren S, Woyke T, Stepanauskas R. (2014). Genomic and Metabolic Diversity of Marine Group I Thaumarchaeota in the Mesopelagic of Two Subtropical
Gyres. PLoS ONE. Vol9, Issue 4, e95380.
Garcia, S. L., McMahon, K. D., Martinez-Garcia, M., Srivastava, A., Sczyrba, A., Stepanauskas, R., Grossart, H.-P., et al. (2012). Metabolic potential of a single cell belonging to one of the most abundant lineages in freshwater bacterioplankton. ISME journal, 7 (1), 137–147. doi:10.1038/ismej.2012.86.
Gomariz; M; Manuel Martínez-García; M; Santos F; Constantino M; Meseguer I; Antón J. Retinal-binding proteins mirror prokaryotic dynamics in multi-pond solar salterns. Environmental Microbiology. in press, 2014. ISSN 1462-2912
Brandon K. Swan; Mark D. Chaffin; Manuel Martinez-Garcia; Hilary G. Morrison; Erin K. Field; Nicole J. Poulton; E. Dashiell P. Masland; Christopher C. Harris; Alexander Sczyrba; Stepanauskas; R. Genomic and Metabolic Diversity of Marine Group I Thaumarchaeota in the Mesopelagic of Two Subtropical Gyres. PLoS One. 9, pp. e95380 -. 2014. ISSN 1932-6203
Fernando Santos; Manuel Martínez-García; Víctor Parro; Josefa Antón. Microarray tools to unveil viral-microbe interactions in nature. Frontiers in Ecology and Evolution. 2, pp. 1 - 5. 2014. ISSN 2296-701X
Boujelben I; Martínez-García M; van Pelt J; Maalej S.Diversity of cultivable halophilic archaea and bacteria from superficial hypersaline sediments of Tunisian solar salterns. Antonie Van Leeuwenhoek. 106, pp. 675 - 692. 2014. ISSN 0003-6072
Manuel Martínez-García; Fernando Santos; Mercedes Moreno-Paz; Víctor Parro; Josefa Antón. Unveiling viral–host interactions within the‘microbial dark matter’. Nature Communications. 5, pp. 1 - 8. 2014. ISSN 0028-0836
Bertazzo M; Montero-Calasanz M; Martinez-Garcia M; Sproer C; Schumann P; Kroppenstedt R; Stackebrandt E; Klenk HP; Fiedler HP. Geodermatophilus brasiliensis sp. nov., isolated from Brazilian soil. IJSME. 64, pp. 2841 - 2848. 2014. ISSN 1466-5026
Ghylin T; Garcia S; Moya F; Oyserman B; Schwientek P; Forest K; Mutschler J; Dwulit-Smith J; Chan LK; Martinez-Garcia M; Sczyrba A; Stepanauskas R; Grossart HP; Woyke T; Warnecke F; Malmstrom R; et al. Comparative single-cell genomics reveals potential ecological niches for the freshwater acI Actinobacteria lineage. The ISME Journal. 2014. ISSN 1751-7362
María Gomariz; Manuel Martínez-García; Fernando Santos; Francisco Rodriguez; Salvador Capella-Gutiérrez; Toni Gabaldón; Ramon Rosselló-Móra; Inmaculada Meseguer; Josefa Antón. From community approaches to single-cell genomics: the discovery of ubiquitous hyperhalophilic Bacteroidetes generalists.The ISME Journal. epub ahead, 2014. ISSN 1751-7362
Ghylin; T; Mutschler; J; Oyserman; B; Schwientek; P; Chan; LK; Garcia; S; Martinez-Garcia; M; Sczyrba; A; Stepanauskas; R; Grossart; HP; Woyke; T; Warnecke; F; Malmstrom; R; Bertilsson; S. Comparative single cell genomics reveals potential ecological niches for the acI lineage of freshwater Actinobacteria. The ISME Journal. 2013. ISSN 1751-7362
Eiler; A; Zaremba-Niedzwiedzka; K; Andersson; S; Martinez-Garcia; M; McMahon; K; Sepanauskas; R; Bertilsson; S. Productivity and salinity structuring of bacterioplankton communities revealed by comparative freshwater metagenomics. Environmental Microbiology. 2013. ISSN 1462-2912
Swan; B; Tupper; B; Sczyrba; A; Lauro; F; Martinez-Garcia; M; González JM; Luo H; Wright; J; Landry; Z; Hanson; N; Thompson; B; Poulton; N; Schwientek; P; Acinas; S; Giovannoni; S; Mora. Prevalent genome streamlining and latitudinal divergence of marine bacteria in the surface ocean. PNAS. 2013. ISSN 0027-8424
Boujelben I; Gomariz M; Martínez-García M; Santos F; Peña A; López C; Antón J; Maalej S. Spatial and seasonal prokaryotic community dynamics in ponds of increasing salinity of Sfax solar saltern in Tunisia. Antonie van Leeuwenhoek. 101, pp. 845 - 857. 2012. ISSN 1572-9699
Martinez-Garcia, M.; Swan, B.; Poulton, N.; Lluesma Gomez, M.; Masland, D.; Sieracki, M.; Stepanauskas, R. High throughput single cell sequencing identifies photoheterotrophs and chemoautotrophs in freshwater bacterioplankton. The ISME Journal. 6, pp. 113 - 123. 2012. ISSN 1751-7362
Emily J. Fleming, Amy E. Langdon, Manuel Martinez-Garcia, Ramunas Stepanauskas, Nicole J. Poulton, E. Dashiell P. Masland, David Emerson. What isnew is old: resolving the identity of Leptothrix ochracea using single cell genomics, pyrosequencing and FISH. PLoS One. 2011. ISSN 1932-6203
Martínez-García, M.; Koblizek, M.; Lopez-Legentil, S.; Antón, J.Epibiosis of oxygenic phototrophs containing chlorophylls a, b, c, and d on the colonial ascidian Cystodytes dellechiajei. Microbial Ecology. 61, pp. 13 - 19. 2011. ISSN 0095-3628
Swan, B.; Martinez Garcia, M.; Preston, C.; Sczyrba, A.; Woyke, T.; Lamy, D.; Reinthaler, T.; Poulton, N.; Masland, D.; Lluesma-Gomez, M.; Sieracki, M; DeLong, E.; Herndl, G.; Stepanauskas, R. Potential for chemolithoautotrophy among ubiquitous bacteria lineages in the dark ocean. Science. 333, pp. 1296 - 1300. 2011. ISSN0036-8075
Martínez-García, M.; Díaz-Valdés, M.; Antón, J. Diversity of pufM genes, involved in aerobic anoxygenic photosynthesis, in the bacterial communities associated with colonial ascidians. FEMS Microbiology Ecology. 71, pp. 387 - 398. 2010. ISSN 0168-6496
Antón, J.; Peña, A.; Santos, F.; Martínez-García, M.; Schmitt-Kopplin, P.; Rosselló-Mora, R. Distribution, abundance and diversity of the extremely halophilic bacterium Salinibacter ruber. Saline Systems. 4, pp. 2 - 26.2008. ISSN 1746-1448
Burcin Mutlu, M.; Martinez-Garcia, M.; Santos, F.; Peña, A.; Guven, K.; Anton, J.Prokaryotic diversity in Tuz Lake, a hypersaline environment in Inland Turkey. FEMS Microbiology Ecology. 65, pp. 474 - 483. 2008. ISSN0168-6496
Martínez-García, M.; Stief, P.; Díaz-Valdés, M.; Wanner, G.; Ramos-Esplá, A.; Dubilier, N.; Antón J. Ammonia-oxidizing Crenarchaeota and nitrification inside the tissue of a colonial ascidian. Environmental Microbiology. 10, pp. 2991 - 3001. 2008. ISSN 1462-2912
Martínez-García, M.; Díaz-Valdés, M.; Ramos-Esplá, A.; Salvador, N.; Lopez, P.; Larriba, E.; Anton, J. Cytotoxicity of the ascidian Cystodytes dellechiajei against tumor cells and study of the involvement of associated microbiota in the production of cytotoxic compounds. Marine Drugs. 5, pp. 52 - 70. 2007. ISSN 1660-3397
Manuel Martínez-García; Marta Díaz-Valdés; Gerhard Wanner; Alfonso Ramos-Esplá; Josefa Antón. Microbial community associated with the colonial ascidian Cystodytes dellechiajei. Environmental Microbiology. 9, pp. 521 -534. 2007. ISSN 1462-2912
See full list in Google Scholar Citation index https://scholar.google.com/citations?user=Pu8Dj-wAAAAJ
Carlos Guerrero-Beltrán, Inmaculada Garcia-Heredia, Rafael Ceña-Diez, Ignacio Rodriguez-Izquierdo, Mª Jesús Serramía, Francisco Martinez-Hernandez, Mónica Lluesma-Gomez, Manuel Martinez-Garcia*, and María Ángeles Muñoz-Fernández*. G2-S16 Dendrimer Inhibits HSV-2 infection and protects mice vaginal microbiome. 2020. Pharmaceutics (in press). Underlined authors: share authorship. (*) corresponding authors
Manuel Martinez-Garcia, Francisco Martinez-Hernandez, Joaquín Martínez Martínez. Chapter Single-Virus Genomics: Studying Uncultured Viruses, One at a Time. In "Encyclopedia of Virology". 2020
Lucia Maestre‐Carballa, Monica Lluesma Gomez, Andrea Angla Navarro, Inmaculada Garcia‐Heredia, Francisco Martinez‐Hernandez, Manuel Martinez‐Garcia. 2019. Insights into the antibiotic resistance dissemination in a wastewater effluent microbiome: bacteria viruses and vesicles matter. Environmental Microbiology. 21 (12), 4582-4596
Francisco Martinez‐Hernandez, Elaine Luo, Kento Tominaga, Hiroyuki Ogata, Takashi Yoshida, Edward F DeLong, Manuel Martinez‐Garcia. Diel cycling of the cosmopolitan abundant Pelagibacter virus 37‐F6: one of the most abundant viruses on earth. (2019). Environmental Microbiology Reports 12 (2), 214-219. Underlined authors: share authorship
Garcia-Heredia I, Bhattacharjee A, Fornas O, Lluesma Gomez M, Martínez Martínez J, Martinez-Garcia M (submitted to Environmental Microbiology). Benchmarking of Single-Virus Genomics: a new tool for uncovering the virosphere
Africa McMullen, Francisco Martinez-Hernandez and Manuel Martinez-Garcia. Absolute quantification of microorganisms by chip-based digital PCR. 2019. Environmental Microbiology Reports. 11 (6), 855-860.
M Mira Miralles, L Maestre-Carballa, M Lluesma-Gomez and Manuel Martinez-Garcia (2019). High-Throughput 16S rRNA Sequencing to Assess Potentially Active Bacteria and Foodborne Pathogens: A Case Example in Ready-to-Eat Food. Foods 8 (10), 480
Maestre-Carballa L, Lluesma Gomez M, Angla Navarro A, Garcia-Heredia I, Martinez-Hernandez F, and Martinez-Garcia M. (2019) Insights into prokaryotic and viral resistomes and potential role of vesicles in antibiotic resistance in wastewater effluent microbiome. Environmental Microbiology. https://doi.org/10.1111/1462-2920.14758
Martinez-Hernandez F, Garcia-Heredia I, Lluesma Gomez M, Maestre-Carballa L, Martínez-Martínez J, and Martinez-Garcia (2019). Using droplet digital PCR to estimate absolute abundances of widespread Pelagibacter viruses. Frontiers in Virology, 10: 1226.
Ana‐Belen Martin‐Cuadrado, Ece Senel, Manuel Martínez‐García, Ana Cifuentes, Fernando Santos, Cristina Almansa, Mercedes Moreno‐Paz, Yolanda Blanco, Miriam García‐Villadangos, M Ángeles García del Cura, M Esther Sanz‐Montero, J Pablo Rodríguez‐Aranda, Ramon Rosselló‐Móra, Josefa Antón, Víctor Parro. Prokaryotic and viral community of the sulfate‐rich crust from Peñahueca ephemeral lake, an astrobiology analogue. (2019). Environmental Microbiology. doi: 10.1111/1462-2920.14680
María Dolores Ramos-Barbero, Ana-B. Martin-Cuadrado, Tomeu Viver, Fernando Santos, Manuel Martinez-Garcia, and Josefa Antón. (2018). Recovering microbial genomes from metagenomes in hypersaline environments: The Good, the Bad and the Ugly. Systematic and Applied Microbiology (2019).
Simon Roux et al. Minimum Information about an Uncultivated Virus Genome (MIUViG). (2018). Nature Biotechnology (2019) doi:10.1038/nbt.4306
Martinez-Hernandez F, Fornas O, Lluesma Gomez M, Garcia-Heredia I, Maestre-Carballa L, López-Pérez M, Haro-Moreno JM, Rodriguez-Valera F, and Martinez-Garcia M. (2018). Single-cell genomics uncover Pelagibacter as the putative host of the extremely abundant uncultured 37-F6 viral population in the ocean. ISME Journal. doi: 10.1038/s41396-018-0278-7
Cruz Peña MJ, Martinez-Hernandez F, Garcia-Heredia I, Lluesma Gomez M, Fornas O and Martinez-Garcia M. (2018). Deciphering the Human Virome with Single-Virus Genomics and Metagenomics. Viruses. 10 (3), 113; doi: 10.3390/v10030113.
Martinez-Hernandez F, Fornas O, Lluesma M, Bolduc B, Cruz MJ, Martínez Martínez J, Antón J, Gasol J, Rosselli R, Rodríguez-Valera R, Sullivan MB, Acinas S and Manuel Martinez-Garcia. Single-virus genomics reveals hidden cosmopolitan and abundant viruses. Nature Communications. (2017) doi:10.1038/ncomms15892
Bertilsson S, Eiler A, Mondav R, Fernandez-Vidal L, Sinclair L, Scofield D, Schwientek P, Martinez-Garcia M, Torrents D, McMahon K, Anderson S, Stepanauskas R, and Woke T. (2016) Tuning fresh: radiation through rewiring of central metabolism in streamlined bacteria. ISME Journal
Gomariz M, Martínez-García M, Santos F, Rodriguez F, Capella-Gutiérrez S, Gabaldón T, Rosselló-Móra R, Meseguer I and Antón J. (2015) From community approaches to single-cell genomics: the discovery of ubiquitous hyperhalophilic Bacteroidetes generalists. ISME Journal. 9: 16-31.
Martínez-García M., Santos F., Moreno-Paz M., Parro V., & Antón J (2014). Unveiling viral-host interactions within the ‘microbial dark matter’. Nature Communications. doi:10.1038/ncomms5542. Recommended in Faculty of 1000
Manuel Martinez-Garcia, Brandon K. Swan, David Brazel, Nicole J. Poulton, Monica Lluesma Gomez, Dashiell Masland, Carol Arnosti, Michael E. Sieracki and Ramunas Stepanauskas. "Capturing Single Cell Genomes of Active Polysaccharide Degraders: An Unexpected Contribution of Verrucomicrobia" (2012). PLoS ONE 7(4): e35314. doi:10.1371/journal.pone.0035314.
Manuel Martinez-Garcia, David Brazel, Nicole J. Poulton, Brandon K. Swan, Monica Lluesma Gomez, Dashiell Masland, Michael E. Sieracki and Ramunas Stepanauskas. (2011) Unveiling in situ interactions between marine protists and bacteria through single cell sequencing. ISME Journal. Mar;6(3):703-707 7. doi: 10.1038/ismej.2011.126. Recommended in Faculty of 1000
Manuel Martinez-Garcia, Brandon K. Swan, Nicole J. Poulton, Monica Lluesma Gomez, Dashiell Masland, Michael E. Sieracki and Ramunas Stepanauskas. (2012) High throughput single cell sequencing identifies photoheterotrophs and chemoautotrophs in freshwater bacterioplankton. ISME Journal. Jan;6(1):113-23. doi: 10.1038/ismej.2011.84.
Brandon K. Swan, Manuel Martinez-Garcia, Christina M. Preston, Nicole Poulton, E. Dashiell P. Masland, Monica Lluesma-Gomez, Edward F. DeLong, Michael E. Sieracki and Ramunas Stepanauskas. (2011). Potential for chemolithoautotrophy among ubiquitous bacteria lineages in the dark ocean. Science. 333: 1296-1300.
Swan, B., Tupper, B., Sczyrba, A., Lauro, F., Martinez-Garcia, M et al. and Stepanauskas, R. (doi: 10.1073/pnas.1304246110 ). Prevalent genome streamlining and latitudinal divergence of surface ocean bacterioplankton. PNAS
Santos F., Martinez Garcia M., Parro V., and Anton, J. (2014, in press). Microarray tools to unveil viral-microbe interactions in nature. Frontiers in Ecology and Evolution.
Ghylin T, Moya F, Oyserman, B, Garcia, S, Mutschler J, Schwientek P, Forest, K, Chan L-K, Martinez-Garcia M, Sczyrba A, Stepanauskas R, Grossart H, Woyke T, Warnecke F, Malmstrom R, Bertilsson S, McMahon K. Comparative single-cell genomics reveals potential ecological niches for freshwater ultramicrobacteria of the acI Actinobacteria lineage. ISME Journal (In press).
María Gomariz, Manuel Martínez-García, Fernando Santos, Francisco Rodriguez, Salvador Capella-Gutiérrez, Toni Gabaldón, Ramon Rosselló-Móra, Inmaculada Meseguer, and Josefa Antón. From community approaches to single cell genomics: the discovery of ubiquitous hyperhalophilic Bacteroidetes generalists. ISME Journal (In press).
Swan, B, Chaffin, M, Martinez-Garcia, M, Morrison, H, Field E, Poulton N, Masland D, Harris C, Sczyrba A, Chain P, Koren S, Woyke T, Stepanauskas R. (2014). Genomic and Metabolic Diversity of Marine Group I Thaumarchaeota in the Mesopelagic of Two Subtropical
Gyres. PLoS ONE. Vol9, Issue 4, e95380.
Garcia, S. L., McMahon, K. D., Martinez-Garcia, M., Srivastava, A., Sczyrba, A., Stepanauskas, R., Grossart, H.-P., et al. (2012). Metabolic potential of a single cell belonging to one of the most abundant lineages in freshwater bacterioplankton. ISME journal, 7 (1), 137–147. doi:10.1038/ismej.2012.86.
Gomariz; M; Manuel Martínez-García; M; Santos F; Constantino M; Meseguer I; Antón J. Retinal-binding proteins mirror prokaryotic dynamics in multi-pond solar salterns. Environmental Microbiology. in press, 2014. ISSN 1462-2912
Brandon K. Swan; Mark D. Chaffin; Manuel Martinez-Garcia; Hilary G. Morrison; Erin K. Field; Nicole J. Poulton; E. Dashiell P. Masland; Christopher C. Harris; Alexander Sczyrba; Stepanauskas; R. Genomic and Metabolic Diversity of Marine Group I Thaumarchaeota in the Mesopelagic of Two Subtropical Gyres. PLoS One. 9, pp. e95380 -. 2014. ISSN 1932-6203
Fernando Santos; Manuel Martínez-García; Víctor Parro; Josefa Antón. Microarray tools to unveil viral-microbe interactions in nature. Frontiers in Ecology and Evolution. 2, pp. 1 - 5. 2014. ISSN 2296-701X
Boujelben I; Martínez-García M; van Pelt J; Maalej S.Diversity of cultivable halophilic archaea and bacteria from superficial hypersaline sediments of Tunisian solar salterns. Antonie Van Leeuwenhoek. 106, pp. 675 - 692. 2014. ISSN 0003-6072
Manuel Martínez-García; Fernando Santos; Mercedes Moreno-Paz; Víctor Parro; Josefa Antón. Unveiling viral–host interactions within the‘microbial dark matter’. Nature Communications. 5, pp. 1 - 8. 2014. ISSN 0028-0836
Bertazzo M; Montero-Calasanz M; Martinez-Garcia M; Sproer C; Schumann P; Kroppenstedt R; Stackebrandt E; Klenk HP; Fiedler HP. Geodermatophilus brasiliensis sp. nov., isolated from Brazilian soil. IJSME. 64, pp. 2841 - 2848. 2014. ISSN 1466-5026
Ghylin T; Garcia S; Moya F; Oyserman B; Schwientek P; Forest K; Mutschler J; Dwulit-Smith J; Chan LK; Martinez-Garcia M; Sczyrba A; Stepanauskas R; Grossart HP; Woyke T; Warnecke F; Malmstrom R; et al. Comparative single-cell genomics reveals potential ecological niches for the freshwater acI Actinobacteria lineage. The ISME Journal. 2014. ISSN 1751-7362
María Gomariz; Manuel Martínez-García; Fernando Santos; Francisco Rodriguez; Salvador Capella-Gutiérrez; Toni Gabaldón; Ramon Rosselló-Móra; Inmaculada Meseguer; Josefa Antón. From community approaches to single-cell genomics: the discovery of ubiquitous hyperhalophilic Bacteroidetes generalists.The ISME Journal. epub ahead, 2014. ISSN 1751-7362
Ghylin; T; Mutschler; J; Oyserman; B; Schwientek; P; Chan; LK; Garcia; S; Martinez-Garcia; M; Sczyrba; A; Stepanauskas; R; Grossart; HP; Woyke; T; Warnecke; F; Malmstrom; R; Bertilsson; S. Comparative single cell genomics reveals potential ecological niches for the acI lineage of freshwater Actinobacteria. The ISME Journal. 2013. ISSN 1751-7362
Eiler; A; Zaremba-Niedzwiedzka; K; Andersson; S; Martinez-Garcia; M; McMahon; K; Sepanauskas; R; Bertilsson; S. Productivity and salinity structuring of bacterioplankton communities revealed by comparative freshwater metagenomics. Environmental Microbiology. 2013. ISSN 1462-2912
Swan; B; Tupper; B; Sczyrba; A; Lauro; F; Martinez-Garcia; M; González JM; Luo H; Wright; J; Landry; Z; Hanson; N; Thompson; B; Poulton; N; Schwientek; P; Acinas; S; Giovannoni; S; Mora. Prevalent genome streamlining and latitudinal divergence of marine bacteria in the surface ocean. PNAS. 2013. ISSN 0027-8424
Boujelben I; Gomariz M; Martínez-García M; Santos F; Peña A; López C; Antón J; Maalej S. Spatial and seasonal prokaryotic community dynamics in ponds of increasing salinity of Sfax solar saltern in Tunisia. Antonie van Leeuwenhoek. 101, pp. 845 - 857. 2012. ISSN 1572-9699
Martinez-Garcia, M.; Swan, B.; Poulton, N.; Lluesma Gomez, M.; Masland, D.; Sieracki, M.; Stepanauskas, R. High throughput single cell sequencing identifies photoheterotrophs and chemoautotrophs in freshwater bacterioplankton. The ISME Journal. 6, pp. 113 - 123. 2012. ISSN 1751-7362
Emily J. Fleming, Amy E. Langdon, Manuel Martinez-Garcia, Ramunas Stepanauskas, Nicole J. Poulton, E. Dashiell P. Masland, David Emerson. What isnew is old: resolving the identity of Leptothrix ochracea using single cell genomics, pyrosequencing and FISH. PLoS One. 2011. ISSN 1932-6203
Martínez-García, M.; Koblizek, M.; Lopez-Legentil, S.; Antón, J.Epibiosis of oxygenic phototrophs containing chlorophylls a, b, c, and d on the colonial ascidian Cystodytes dellechiajei. Microbial Ecology. 61, pp. 13 - 19. 2011. ISSN 0095-3628
Swan, B.; Martinez Garcia, M.; Preston, C.; Sczyrba, A.; Woyke, T.; Lamy, D.; Reinthaler, T.; Poulton, N.; Masland, D.; Lluesma-Gomez, M.; Sieracki, M; DeLong, E.; Herndl, G.; Stepanauskas, R. Potential for chemolithoautotrophy among ubiquitous bacteria lineages in the dark ocean. Science. 333, pp. 1296 - 1300. 2011. ISSN0036-8075
Martínez-García, M.; Díaz-Valdés, M.; Antón, J. Diversity of pufM genes, involved in aerobic anoxygenic photosynthesis, in the bacterial communities associated with colonial ascidians. FEMS Microbiology Ecology. 71, pp. 387 - 398. 2010. ISSN 0168-6496
Antón, J.; Peña, A.; Santos, F.; Martínez-García, M.; Schmitt-Kopplin, P.; Rosselló-Mora, R. Distribution, abundance and diversity of the extremely halophilic bacterium Salinibacter ruber. Saline Systems. 4, pp. 2 - 26.2008. ISSN 1746-1448
Burcin Mutlu, M.; Martinez-Garcia, M.; Santos, F.; Peña, A.; Guven, K.; Anton, J.Prokaryotic diversity in Tuz Lake, a hypersaline environment in Inland Turkey. FEMS Microbiology Ecology. 65, pp. 474 - 483. 2008. ISSN0168-6496
Martínez-García, M.; Stief, P.; Díaz-Valdés, M.; Wanner, G.; Ramos-Esplá, A.; Dubilier, N.; Antón J. Ammonia-oxidizing Crenarchaeota and nitrification inside the tissue of a colonial ascidian. Environmental Microbiology. 10, pp. 2991 - 3001. 2008. ISSN 1462-2912
Martínez-García, M.; Díaz-Valdés, M.; Ramos-Esplá, A.; Salvador, N.; Lopez, P.; Larriba, E.; Anton, J. Cytotoxicity of the ascidian Cystodytes dellechiajei against tumor cells and study of the involvement of associated microbiota in the production of cytotoxic compounds. Marine Drugs. 5, pp. 52 - 70. 2007. ISSN 1660-3397
Manuel Martínez-García; Marta Díaz-Valdés; Gerhard Wanner; Alfonso Ramos-Esplá; Josefa Antón. Microbial community associated with the colonial ascidian Cystodytes dellechiajei. Environmental Microbiology. 9, pp. 521 -534. 2007. ISSN 1462-2912
